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Publications

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Special Issue of the Bulletin of Mathematical Biology, Multi-scale Modeling of Tissue Growth and Shape, Mark Alber, Christophe Godin, Philip Maini, Roeland Merks, Eric Mjolsness, Editors (to appear).

Kim, O.V., Nevzorova, T.A., Mordakhanova, E.R., Ponomareva, A.A., Andrianova, I.A., Le Minh, G., Daminova, A.G., Peshkova, A.D., Alber, M.S., Vagin, O., Litvinov, R.I., Weisel, J.W., Fatal dysfunction and disintegration of thrombin-stimulated platelets. Haematologica. 2019 Feb 21. pii: haematol.2018.202309. doi: 10.3324/haematol.2018.202309. [Epub ahead of print]

Shixin Xu, Mark Alber and Zhiliang Xu [2019], Three-phase Model of Visco-elastic Incompressible Fluid Flow and its Computational Implementation, Communications in Computational Physics 25(2):586-624.

Banwarth-Kuhn, M., Nematbakhsh, A., Rodriguez, K.W., Snipes, S., Rasmussen, C.G., Reddy, G.V., Alber, M. [2018], Cell-Based Model of the Generation and Maintenance of the Shape and Structure of the Multilayered Shoot Apical Meristem of Arabidopsis thaliana. Bull. Math. Biol. 2018 Dec 14. doi: 10.1007/s11538-018-00547-z. [Epub ahead of print]

Shixin Xu, Zhiliang Xu, Oleg Kim, Rustem I. Litvinov, John W. Weisel and Mark Alber [2017], Model Predictions of Deformation, Embolization, and Permeability of Partially Obstructive Blood Clots under Variable Shear Flow, Journal of the Royal Society Interface 14: 20170441. http://dx.doi.org/10.1098/rsif.2017.0441

Oleg, V. Kim, Rustem I. Litvinov, Mark S. Alber and John W. Weisel [2017], Quantitative Structural Mechanobiology of Platelet-Driven Blood Clot Contraction, Nature Communications 8: 1274. https://www.nature.com/articles/s41467-017-00885-x.pdf (authors for correspondence: J.W. Weisel and M. Alber).

Peter Hook, Rustem I. Litvinov, Oleg V. Kim, Shixin Xu, Zhiliang Xu, Joel S. Bennett, Mark S. Alber and John W. Weisel [2017], Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi, Scientific Reports 7: 13001 (published by Nature) DOI:10.1038/s41598-017-12615-w

Y. Klymenko, O. Kim, E. Loughran, J. Yang, R. Lombard, M. Alber and M.S. Stack [2017], Cadherin composition and multicellular aggregate invasion in organotypic models of epithelial ovarian cancer intraperitoneal metastasis, Oncogene Oct 19;36(42):58405851. doi: 10.1038/onc.2017.171 (published by Springer Nature, authors for correspondence: M.S. Stack and M. Alber).

Peter Hook, Teresa Brito-Robinson, Oleg Kim, Cofy, Narciso, Holly V. Goodson, John W. Weisel, Mark S. Alber and Jeremiah J. Zartman, Whole Blood Clot Optical
Clearing for Nondestructive 3D Imaging and Quantitative Analysis, Biomedical Optics Express, Volume 8, Issue 8, Page 3671. (authors for correspondence: J.Zartman, J.W.Weisel and M. Alber).

Ali Nematbakhsh, Wenzhao Sun, Pavel A. Brodskiy, Aboutaleb Amiri, Cody Narciso, Zhiliang Xu, Jeremiah J. Zartman, Mark Alber [2017], Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia, PLoS  Computational Biology, 13(5): e1005533. https://doi.org/10.1371/journal.pcbi.1005533

Aranda R. Duan, Erin M. Jonasson, Emily O. Alberico, Chunlei Li, Jared P. Scripture, Rachel A. Miller, Mark S. Alber and Holly V. Goodson [2017], Interactions between Tau and different conformations of tubulin: Implications for Tau function and  mechanism, Journal of Molecular Biology 429(9):1424-1438. doi: 10.1016/j.jmb.2017.03.018.

O.V. Kim, R.I. Litvinov, J. Chen, D.Z. Chen, J.W. Weisel and M.S. Alber [2017], Compression-induced structural and mechanical changes of fibrin-collagen composites, Matrix Biol. 2017 Jul;60-61:141-156. doi: 10.1016/j.matbio.2016.10.007. 

Aboutaleb Amiri, Cameron Harvey, Amy Buchmann, Scott Christley, Joshua D. Shrout, Igor S. Aranson, Mark Alber [2017], Reversals and collisions optimize  protein exchange in bacterial swarms, Physical Review E 95, 032408.

Martina Bukac and Mark Alber[2017], Multi-component model of intramural hematoma, Journal of Biomechanics 50, 42-49.

Kim O., Liang, X., Litvinov, R.I., Weisel, J.W., Alber, M.S., Purohit, P.K. [2016], Foam-like compression behavior of fibrin networks, Biomech Model Mechanobiol. 15:213-228.

Chen, J., M.S. Alber, and D.Z. Chen, A Hybrid Approach for Segmentation and Tracking of Myxococcus xanthus Swarms [2016], IEEE Transactions on Medical Imaging 35(9):2074-84.